SeqLoc2Gene
Find known Entrez Genes in given genomic locations DESCRIPTIONApplication to find known Entrez Genes in given genomic locations
Provided by www.Genenformics.com
SeqLoc2Gene [-h] [-help] [-logfile File_Name]
[-conffile File_Name] [-version] [-dryrun] <seqlocs>
REQUIRED ARGUMENTS
seqlocs <String>
string of gi or acc with/without range separated by comma(,)
like NC_000014:74815000-74819000,NM_005252,51493278:56745284-56749000
OPTIONAL ARGUMENTS
-h
Print USAGE and DESCRIPTION; ignore other arguments
-help
Print USAGE, DESCRIPTION and ARGUMENTS description; ignore other arguments
-logfile <File_Out>
File to which the program log should be redirected
-conffile <File_In>
Program's configuration (registry) data file
-version
Print version number; ignore other arguments
-dryrun
Dry run the application: do nothing, only test all preconditions
EXAMPLE
SeqLoc2Gene.exe NC_000014:74815000-74819000,NM_005252,51493278:56745284-56749000
Input Map Accession From To Strand GeneId Locus Description
NC_000014:74815000-74819000 NT_026437.11 56745284 56748666+ 2353 FOS
NM_005252 NM_005252.2 1 2084 + 2353 FOS v-fos FBJ murine osteosarcoma viral oncogene homolog
51493278:56745284-56749000 NT_026437.11 56745284 56748666+ 2353 FOS